NYU High Performance Computing
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GitLab
NYU High Performance Computing
GitLab
Introduction
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HPC Systems
HPC Systems
Greene
Greene
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Hardware specs
Storage specs
Getting started
Getting started
Getting started
AMD Nodes
Best practices
Software
Software
R packages with renv
R packages with renv
Renv
RStudio + R + Python, reproducible way
Python packages with virtual environments
Conda environments (Python, R)
Singularity with Miniconda
Open OnDemand (OOD) with Conda/Singularity
LLAMA on HPC
System status
HPC Storage
HPC Storage
Hardware specs
Best practices
Storage status
Data management
Data management
Data transfers
Data transfers
Transferring Cloud Storage data with rclone
Globus
Sharing data on HPC
Research Project Space (RPS)
Squash file system and Singularity
Datasets
Cloud Computing
Cloud Computing
GCP self-managed projects
HPC bursting to cloud
NIH STRIDES
MATLAB online
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Dataproc
Retired clusters
Accessing HPC
Accessing HPC
Getting and renewing an account
External collaborators
Training and support
Training and support
Support
General HPC Topics
General HPC Topics
SLURM: Submitting jobs
SLURM: Main commands
Singularity: Running custom applications with containers
Tunneling and X11 Forwarding
VS Code
AI at HPC: tips
AI at HPC: tips
Large number of small files
R and Python in the cloud
SQLite: Handling large structured data
Joblib example
DASK example
Independent R tasks example
LLM on HPC
Spark: Interactive standalone cluster
Spark: Multi-node jobs with Singularity
Tutorials
Tutorials
Linux tutorial
Slurm tutorial
Big data tutorial: Spark
Resources for classes
Resources for classes
JupyterHub
Grants
Supported research initiatives
Supported research initiatives
REDCap
Secure Research Data Environment (SRDE)
High Speed Research Network
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Resolving common issues
HPC projects registration - pilot
HPC projects
HPC projects
Projects registration
About
About
Cluster stats and usage data
Cluster stats and usage data
Efficiency of user jobs
Resource consumption
Acknowledgement statement
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Featured research
Featured research
Sign language app
Cognitive phenomera
Heart attack treatment
DNA repair
MRI
Ocean warming
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